Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015804524.1_cds_XP_016489181.1_7950
CDS Infomation

[gene=LOC107809095] [db_xref=GeneID:107809095] [protein=lycopene beta cyclase, chloroplastic-like] [protein_id=XP_016489181.1] [location=complement(12668..14170)] [gbkey=CDS]
Sequence

ATGGATACATTGTTGAAAACCCCAAATAAGCTTGAGTTTTTGCACCCACTTCATGGATTT
TCGGTTAAAGCTAGCTCCTTTAACTCTGTAAAGCCCCATAAGTTTGGTTCTAGGAAATTT
TGTGAAGATTGGGGTAAAGGGGTTTGTGTTAAGGCTAGTAGTAGTACCCTTTTGGAGCTT
GTACCTGAGACCAAAAAGGAAAATCTTGATTTTGAGCTTCCTATGTATGACCCTTCAAAA
GGTCTTGTTGTAGATCTAGCTGTGGTTGGTGGTGGACCCGCTGGACTTGCGGTTGCACAG
CAGGTTTCAGAGGCTGGACTATCGGTTGTTTCAATCGATCCATCGCCGAAATTGATATGG
CCCAATAACTATGGTGTTTGGGTGGATGAATTTGAGGCCATGGATTTGTTGGATTGCCTT
GACGCTACATGGTCAGGTACTGTTGTTTATATCGATGACAATACAACTAAAGATCTTGAT
AGACCTTATGGAAGGGTTAATAGGAAACAGCTTAAGTCCAAAATGATGCAGAAATGCATA
CTAAACGGTGTTAAATTCCACCACGCCAAAGTTATAAAGGTAATTCACGAGGAAGCTAAA
TCTATGCTGATTTGCAATGATGGTGTAACTATTCAGGCAACGGTGGTTCTTGATGCAACT
GGCTTCTCAAGATGTCTTGTTCAGTATGATAAGCCATATAATCCTGGATATCAAGTAGCT
TATGGCATATTGGCGGAAGTGGAGGAACATCCCTTTGATACAAGTAAGATGGTTCTCATG
GATTGGCGAGATTCGCATCTTGGTAATAATATGGAGCTGAGGGAGAGAAATAGAAAAGTT
CCAACTTTTTTATATGCCATGCCATTTTCATCGAATAGTATATTTCTTGAAGAAACCTCA
CTTGTTGCTCGTCCTGGATTGCGTATGGACGATATTCAAGAAAGAATGGTGGCTCGTTTA
AATCACTTGGGTATTAAAGTTAAGAGCATTGAAGAGGACGAGTATTGTGTAATTCCGATG
GGAGGCCCTCTTCCTGTATTACCTCAGAGAGTTGTTGGAGTTGGTGGTACAGCTGGTATG
GTTCATCCCTCAACAGGTTATATGGTAGCAAGGACCCTAGCTGCAGCTCCGGTCGTCGCT
AATGCAATAATTCAATACCTTGGTTCTGAGAAAGACCTTTTTGGTAATGAGTTATCTGCA
GCTGTTTGGAAAGATTTGTGGCCCATAGAAAGGAGACGTCAAAGAGAATTCTTTTGCTTC
GGTATGGATATTCTTCTGAAGCTTGATTTACCCGCTACGAGAAGGTTTTTCGATGCCTTT
TTTGATCTAGAACCTCGTTATTGGCATGGCTTCTTGTCATCTCGGCTGTATCTTCCCGAG
CTTATATTTTTTGGGCTGTCCCTTTTCGCTCGCGCTTCAAATACTTCCAGAATAGAGATT
ATGACAAAGGGAACTCTTCCTTTGGTAAATATGATCAACAATTTGATACAGGATACTGAA
TGA

Peptide Sequence

PEP ID

XP_016489181.1
PEP Infomation

PREDICTED: lycopene beta cyclase, chloroplastic-like [Nicotiana tabacum]
Sequence

MDTLLKTPNKLEFLHPLHGFSVKASSFNSVKPHKFGSRKFCEDWGKGVCVKASSSTLLEL
VPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVVSIDPSPKLIW
PNNYGVWVDEFEAMDLLDCLDATWSGTVVYIDDNTTKDLDRPYGRVNRKQLKSKMMQKCI
LNGVKFHHAKVIKVIHEEAKSMLICNDGVTIQATVVLDATGFSRCLVQYDKPYNPGYQVA
YGILAEVEEHPFDTSKMVLMDWRDSHLGNNMELRERNRKVPTFLYAMPFSSNSIFLEETS
LVARPGLRMDDIQERMVARLNHLGIKVKSIEEDEYCVIPMGGPLPVLPQRVVGVGGTAGM
VHPSTGYMVARTLAAAPVVANAIIQYLGSEKDLFGNELSAAVWKDLWPIERRRQREFFCF
GMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLYLPELIFFGLSLFARASNTSRIEI
MTKGTLPLVNMINNLIQDTE

Transcript Sequence

Gene sequence data has not been registered.